PoplarV1, Main, Exploration, bibRecord, 000914

Hierarchical Transcription Factor and Chromatin Binding Network for Wood Formation in Black Cottonwood (Populus trichocarpa).

Identifieur interne : 000914 ( Main/Exploration ); précédent : 000913; suivant : 000915

Hierarchical Transcription Factor and Chromatin Binding Network for Wood Formation in Black Cottonwood (Populus trichocarpa).

Source :

The Plant cell [ 1532-298X ] ; 2019.

RBID : pubmed:30755461

Descripteurs français

KwdFr :
- Bois (croissance et développement), Chromatine (génétique), Chromatine (métabolisme), Facteurs de transcription (génétique), Facteurs de transcription (métabolisme), Paroi cellulaire (métabolisme), Populus (croissance et développement), Populus (génétique), Populus (physiologie), Protéines végétales (génétique), Protéines végétales (métabolisme), Régulation de l'expression des gènes au cours du développement (génétique), Régulation de l'expression des gènes végétaux (génétique), Réseaux de régulation génique (génétique).
MESH :
- croissance et développement : Bois, Populus.
- génétique : Chromatine, Facteurs de transcription, Populus, Protéines végétales, Régulation de l'expression des gènes au cours du développement, Régulation de l'expression des gènes végétaux, Réseaux de régulation génique.
- métabolisme : Chromatine, Facteurs de transcription, Paroi cellulaire, Protéines végétales.
- physiologie : Populus.

English descriptors

KwdEn :
- Cell Wall (metabolism), Chromatin (genetics), Chromatin (metabolism), Gene Expression Regulation, Developmental (genetics), Gene Expression Regulation, Plant (genetics), Gene Regulatory Networks (genetics), Plant Proteins (genetics), Plant Proteins (metabolism), Populus (genetics), Populus (growth & development), Populus (physiology), Transcription Factors (genetics), Transcription Factors (metabolism), Wood (growth & development).
MESH :
- chemical , genetics : Chromatin, Plant Proteins, Transcription Factors.
- genetics : Gene Expression Regulation, Developmental, Gene Expression Regulation, Plant, Gene Regulatory Networks, Populus.
- growth & development : Populus, Wood.
- metabolism : Cell Wall, Chromatin, Plant Proteins, Transcription Factors.
- physiology : Populus.

Abstract

Wood remains the world's most abundant and renewable resource for timber and pulp and is an alternative to fossil fuels. Understanding the molecular regulation of wood formation can advance the engineering of wood for more efficient material and energy productions. We integrated a black cottonwood (Populus trichocarpa) wood-forming cell system with quantitative transcriptomics and chromatin binding assays to construct a transcriptional regulatory network (TRN) directed by a key transcription factor (TF), PtrSND1-B1 (secondary wall-associated NAC-domain protein). The network consists of four layers of TF-target gene interactions with quantitative regulatory effects, describing the specificity of how the regulation is transduced through these interactions to activate cell wall genes (effector genes) for wood formation. PtrSND1-B1 directs 57 TF-DNA interactions through 17 TFs transregulating 27 effector genes. Of the 57 interactions, 55 are novel. We tested 42 of these 57 interactions in 30 genotypes of transgenic P. trichocarpa and verified that ∼90% of the tested interactions function in vivo. The TRN reveals common transregulatory targets for distinct TFs, leading to the discovery of nine TF protein complexes (dimers and trimers) implicated in regulating the biosynthesis of specific types of lignin. Our work suggests that wood formation may involve regulatory homeostasis determined by combinations of TF-DNA and TF-TF (protein-protein) regulations.

DOI: 10.1105/tpc.18.00620
PubMed: 30755461
PubMed Central: PMC6482634

Affiliations:

Links toward previous steps (curation, corpus...)

to stream Main, to step Corpus: 000A37
to stream Main, to step Curation: 000A37

Le document en format XML

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<affiliation wicri:level="1"><nlm:affiliation>Institute of Plant Biology, College of Life Science, National Taiwan University, Taipei 10617, Taiwan.</nlm:affiliation>
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<author><name sortKey="Shi, Rui" sort="Shi, Rui" uniqKey="Shi R" first="Rui" last="Shi">Rui Shi</name>
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<author><name sortKey="Yang, Chenmin" sort="Yang, Chenmin" uniqKey="Yang C" first="Chenmin" last="Yang">Chenmin Yang</name>
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<affiliation wicri:level="2"><nlm:affiliation>Forest Biotechnology Group, Department of Forestry and Environmental Resources, North Carolina State University, Raleigh, North Carolina 27695.</nlm:affiliation>
<country xml:lang="fr">États-Unis</country>
<placeName><region type="state">Caroline du Nord</region>
</placeName>
<wicri:cityArea>Forest Biotechnology Group, Department of Forestry and Environmental Resources, North Carolina State University, Raleigh</wicri:cityArea>
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<affiliation wicri:level="2"><nlm:affiliation>Department of Forest Biomaterials, North Carolina State University, Raleigh, North Carolina 27695.</nlm:affiliation>
<country xml:lang="fr">États-Unis</country>
<placeName><region type="state">Caroline du Nord</region>
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<sourceDesc><biblStruct><analytic><title xml:lang="en">Hierarchical Transcription Factor and Chromatin Binding Network for Wood Formation in Black Cottonwood (<i>Populus trichocarpa</i>
).</title>
<author><name sortKey="Chen, Hao" sort="Chen, Hao" uniqKey="Chen H" first="Hao" last="Chen">Hao Chen</name>
<affiliation wicri:level="1"><nlm:affiliation>State Key Laboratory of Tree Genetics and Breeding, Northeast Forestry University, Harbin, 150040, China.</nlm:affiliation>
<country xml:lang="fr">République populaire de Chine</country>
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<affiliation wicri:level="2"><nlm:affiliation>Forest Biotechnology Group, Department of Forestry and Environmental Resources, North Carolina State University, Raleigh, North Carolina 27695.</nlm:affiliation>
<country xml:lang="fr">États-Unis</country>
<placeName><region type="state">Caroline du Nord</region>
</placeName>
<wicri:cityArea>Forest Biotechnology Group, Department of Forestry and Environmental Resources, North Carolina State University, Raleigh</wicri:cityArea>
</affiliation>
<affiliation wicri:level="2"><nlm:affiliation>Department of Genetics, North Carolina State University, Raleigh, North Carolina 27695.</nlm:affiliation>
<country xml:lang="fr">États-Unis</country>
<placeName><region type="state">Caroline du Nord</region>
</placeName>
<wicri:cityArea>Department of Genetics, North Carolina State University, Raleigh</wicri:cityArea>
</affiliation>
</author>
<author><name sortKey="Wang, Jack P" sort="Wang, Jack P" uniqKey="Wang J" first="Jack P" last="Wang">Jack P. Wang</name>
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<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>State Key Laboratory of Tree Genetics and Breeding, Northeast Forestry University, Harbin, 150040</wicri:regionArea>
<wicri:noRegion>150040</wicri:noRegion>
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<affiliation wicri:level="2"><nlm:affiliation>Forest Biotechnology Group, Department of Forestry and Environmental Resources, North Carolina State University, Raleigh, North Carolina 27695.</nlm:affiliation>
<country xml:lang="fr">États-Unis</country>
<placeName><region type="state">Caroline du Nord</region>
</placeName>
<wicri:cityArea>Forest Biotechnology Group, Department of Forestry and Environmental Resources, North Carolina State University, Raleigh</wicri:cityArea>
</affiliation>
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<author><name sortKey="Liu, Huizi" sort="Liu, Huizi" uniqKey="Liu H" first="Huizi" last="Liu">Huizi Liu</name>
<affiliation wicri:level="1"><nlm:affiliation>State Key Laboratory of Tree Genetics and Breeding, Northeast Forestry University, Harbin, 150040, China.</nlm:affiliation>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>State Key Laboratory of Tree Genetics and Breeding, Northeast Forestry University, Harbin, 150040</wicri:regionArea>
<wicri:noRegion>150040</wicri:noRegion>
</affiliation>
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<author><name sortKey="Li, Huiyu" sort="Li, Huiyu" uniqKey="Li H" first="Huiyu" last="Li">Huiyu Li</name>
<affiliation wicri:level="1"><nlm:affiliation>State Key Laboratory of Tree Genetics and Breeding, Northeast Forestry University, Harbin, 150040, China.</nlm:affiliation>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>State Key Laboratory of Tree Genetics and Breeding, Northeast Forestry University, Harbin, 150040</wicri:regionArea>
<wicri:noRegion>150040</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Lin, Ying Chung Jimmy" sort="Lin, Ying Chung Jimmy" uniqKey="Lin Y" first="Ying-Chung Jimmy" last="Lin">Ying-Chung Jimmy Lin</name>
<affiliation wicri:level="1"><nlm:affiliation>State Key Laboratory of Tree Genetics and Breeding, Northeast Forestry University, Harbin, 150040, China.</nlm:affiliation>
<country xml:lang="fr">République populaire de Chine</country>
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<affiliation wicri:level="1"><nlm:affiliation>Department of Life Sciences, College of Life Science, National Taiwan University, Taipei, 10617, Taiwan.</nlm:affiliation>
<country xml:lang="fr">Taïwan</country>
<wicri:regionArea>Department of Life Sciences, College of Life Science, National Taiwan University, Taipei, 10617</wicri:regionArea>
<wicri:noRegion>10617</wicri:noRegion>
</affiliation>
<affiliation wicri:level="1"><nlm:affiliation>Institute of Plant Biology, College of Life Science, National Taiwan University, Taipei 10617, Taiwan.</nlm:affiliation>
<country xml:lang="fr">Taïwan</country>
<wicri:regionArea>Institute of Plant Biology, College of Life Science, National Taiwan University, Taipei 10617</wicri:regionArea>
<wicri:noRegion>Taipei 10617</wicri:noRegion>
</affiliation>
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<author><name sortKey="Shi, Rui" sort="Shi, Rui" uniqKey="Shi R" first="Rui" last="Shi">Rui Shi</name>
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<country xml:lang="fr">États-Unis</country>
<placeName><region type="state">Caroline du Nord</region>
</placeName>
<wicri:cityArea>Forest Biotechnology Group, Department of Forestry and Environmental Resources, North Carolina State University, Raleigh</wicri:cityArea>
</affiliation>
</author>
<author><name sortKey="Yang, Chenmin" sort="Yang, Chenmin" uniqKey="Yang C" first="Chenmin" last="Yang">Chenmin Yang</name>
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<country xml:lang="fr">États-Unis</country>
<placeName><region type="state">Caroline du Nord</region>
</placeName>
<wicri:cityArea>Forest Biotechnology Group, Department of Forestry and Environmental Resources, North Carolina State University, Raleigh</wicri:cityArea>
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<author><name sortKey="Gao, Jinghui" sort="Gao, Jinghui" uniqKey="Gao J" first="Jinghui" last="Gao">Jinghui Gao</name>
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<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>State Key Laboratory of Tree Genetics and Breeding, Northeast Forestry University, Harbin, 150040</wicri:regionArea>
<wicri:noRegion>150040</wicri:noRegion>
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<author><name sortKey="Zhou, Chenguang" sort="Zhou, Chenguang" uniqKey="Zhou C" first="Chenguang" last="Zhou">Chenguang Zhou</name>
<affiliation wicri:level="1"><nlm:affiliation>State Key Laboratory of Tree Genetics and Breeding, Northeast Forestry University, Harbin, 150040, China.</nlm:affiliation>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>State Key Laboratory of Tree Genetics and Breeding, Northeast Forestry University, Harbin, 150040</wicri:regionArea>
<wicri:noRegion>150040</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Li, Quanzi" sort="Li, Quanzi" uniqKey="Li Q" first="Quanzi" last="Li">Quanzi Li</name>
<affiliation wicri:level="1"><nlm:affiliation>State Key Laboratory of Tree Genetics and Breeding, Chinese Academy of Forestry, Beijing 100091, China.</nlm:affiliation>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>State Key Laboratory of Tree Genetics and Breeding, Chinese Academy of Forestry, Beijing 100091</wicri:regionArea>
<placeName><settlement type="city">Pékin</settlement>
</placeName>
</affiliation>
</author>
<author><name sortKey="Sederoff, Ronald R" sort="Sederoff, Ronald R" uniqKey="Sederoff R" first="Ronald R" last="Sederoff">Ronald R. Sederoff</name>
<affiliation wicri:level="2"><nlm:affiliation>Forest Biotechnology Group, Department of Forestry and Environmental Resources, North Carolina State University, Raleigh, North Carolina 27695.</nlm:affiliation>
<country xml:lang="fr">États-Unis</country>
<placeName><region type="state">Caroline du Nord</region>
</placeName>
<wicri:cityArea>Forest Biotechnology Group, Department of Forestry and Environmental Resources, North Carolina State University, Raleigh</wicri:cityArea>
</affiliation>
</author>
<author><name sortKey="Li, Wei" sort="Li, Wei" uniqKey="Li W" first="Wei" last="Li">Wei Li</name>
<affiliation wicri:level="1"><nlm:affiliation>State Key Laboratory of Tree Genetics and Breeding, Northeast Forestry University, Harbin, 150040, China.</nlm:affiliation>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>State Key Laboratory of Tree Genetics and Breeding, Northeast Forestry University, Harbin, 150040</wicri:regionArea>
<wicri:noRegion>150040</wicri:noRegion>
</affiliation>
<affiliation wicri:level="2"><nlm:affiliation>Forest Biotechnology Group, Department of Forestry and Environmental Resources, North Carolina State University, Raleigh, North Carolina 27695.</nlm:affiliation>
<country xml:lang="fr">États-Unis</country>
<placeName><region type="state">Caroline du Nord</region>
</placeName>
<wicri:cityArea>Forest Biotechnology Group, Department of Forestry and Environmental Resources, North Carolina State University, Raleigh</wicri:cityArea>
</affiliation>
</author>
<author><name sortKey="Chiang, Vincent L" sort="Chiang, Vincent L" uniqKey="Chiang V" first="Vincent L" last="Chiang">Vincent L. Chiang</name>
<affiliation wicri:level="1"><nlm:affiliation>State Key Laboratory of Tree Genetics and Breeding, Northeast Forestry University, Harbin, 150040, China vchiang@ncsu.edu.</nlm:affiliation>
<country wicri:rule="url">États-Unis</country>
<wicri:regionArea>State Key Laboratory of Tree Genetics and Breeding, Northeast Forestry University, Harbin, 150040</wicri:regionArea>
<wicri:noRegion>150040</wicri:noRegion>
</affiliation>
<affiliation wicri:level="2"><nlm:affiliation>Forest Biotechnology Group, Department of Forestry and Environmental Resources, North Carolina State University, Raleigh, North Carolina 27695.</nlm:affiliation>
<country xml:lang="fr">États-Unis</country>
<placeName><region type="state">Caroline du Nord</region>
</placeName>
<wicri:cityArea>Forest Biotechnology Group, Department of Forestry and Environmental Resources, North Carolina State University, Raleigh</wicri:cityArea>
</affiliation>
<affiliation wicri:level="2"><nlm:affiliation>Department of Forest Biomaterials, North Carolina State University, Raleigh, North Carolina 27695.</nlm:affiliation>
<country xml:lang="fr">États-Unis</country>
<placeName><region type="state">Caroline du Nord</region>
</placeName>
<wicri:cityArea>Department of Forest Biomaterials, North Carolina State University, Raleigh</wicri:cityArea>
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<series><title level="j">The Plant cell</title>
<idno type="eISSN">1532-298X</idno>
<imprint><date when="2019" type="published">2019</date>
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<term>Chromatin (genetics)</term>
<term>Chromatin (metabolism)</term>
<term>Gene Expression Regulation, Developmental (genetics)</term>
<term>Gene Expression Regulation, Plant (genetics)</term>
<term>Gene Regulatory Networks (genetics)</term>
<term>Plant Proteins (genetics)</term>
<term>Plant Proteins (metabolism)</term>
<term>Populus (genetics)</term>
<term>Populus (growth & development)</term>
<term>Populus (physiology)</term>
<term>Transcription Factors (genetics)</term>
<term>Transcription Factors (metabolism)</term>
<term>Wood (growth & development)</term>
</keywords>
<keywords scheme="KwdFr" xml:lang="fr"><term>Bois (croissance et développement)</term>
<term>Chromatine (génétique)</term>
<term>Chromatine (métabolisme)</term>
<term>Facteurs de transcription (génétique)</term>
<term>Facteurs de transcription (métabolisme)</term>
<term>Paroi cellulaire (métabolisme)</term>
<term>Populus (croissance et développement)</term>
<term>Populus (génétique)</term>
<term>Populus (physiologie)</term>
<term>Protéines végétales (génétique)</term>
<term>Protéines végétales (métabolisme)</term>
<term>Régulation de l'expression des gènes au cours du développement (génétique)</term>
<term>Régulation de l'expression des gènes végétaux (génétique)</term>
<term>Réseaux de régulation génique (génétique)</term>
</keywords>
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<term>Plant Proteins</term>
<term>Transcription Factors</term>
</keywords>
<keywords scheme="MESH" qualifier="croissance et développement" xml:lang="fr"><term>Bois</term>
<term>Populus</term>
</keywords>
<keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Gene Expression Regulation, Developmental</term>
<term>Gene Expression Regulation, Plant</term>
<term>Gene Regulatory Networks</term>
<term>Populus</term>
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<keywords scheme="MESH" qualifier="growth & development" xml:lang="en"><term>Populus</term>
<term>Wood</term>
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<term>Facteurs de transcription</term>
<term>Populus</term>
<term>Protéines végétales</term>
<term>Régulation de l'expression des gènes au cours du développement</term>
<term>Régulation de l'expression des gènes végétaux</term>
<term>Réseaux de régulation génique</term>
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<term>Transcription Factors</term>
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<front><div type="abstract" xml:lang="en">Wood remains the world's most abundant and renewable resource for timber and pulp and is an alternative to fossil fuels. Understanding the molecular regulation of wood formation can advance the engineering of wood for more efficient material and energy productions. We integrated a black cottonwood (<i>Populus trichocarpa</i>
) wood-forming cell system with quantitative transcriptomics and chromatin binding assays to construct a transcriptional regulatory network (TRN) directed by a key transcription factor (TF), PtrSND1-B1 (secondary wall-associated NAC-domain protein). The network consists of four layers of TF-target gene interactions with quantitative regulatory effects, describing the specificity of how the regulation is transduced through these interactions to activate cell wall genes (effector genes) for wood formation. PtrSND1-B1 directs 57 TF-DNA interactions through 17 TFs transregulating 27 effector genes. Of the 57 interactions, 55 are novel. We tested 42 of these 57 interactions in 30 genotypes of transgenic <i>P. trichocarpa</i>
 and verified that ∼90% of the tested interactions function in vivo. The TRN reveals common transregulatory targets for distinct TFs, leading to the discovery of nine TF protein complexes (dimers and trimers) implicated in regulating the biosynthesis of specific types of lignin. Our work suggests that wood formation may involve regulatory homeostasis determined by combinations of TF-DNA and TF-TF (protein-protein) regulations.</div>
</front>
</TEI>
<pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">30755461</PMID>
<DateCompleted><Year>2020</Year>
<Month>02</Month>
<Day>18</Day>
</DateCompleted>
<DateRevised><Year>2020</Year>
<Month>03</Month>
<Day>09</Day>
</DateRevised>
<Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Electronic">1532-298X</ISSN>
<JournalIssue CitedMedium="Internet"><Volume>31</Volume>
<Issue>3</Issue>
<PubDate><Year>2019</Year>
<Month>03</Month>
</PubDate>
</JournalIssue>
<Title>The Plant cell</Title>
<ISOAbbreviation>Plant Cell</ISOAbbreviation>
</Journal>
<ArticleTitle>Hierarchical Transcription Factor and Chromatin Binding Network for Wood Formation in Black Cottonwood (<i>Populus trichocarpa</i>
).</ArticleTitle>
<Pagination><MedlinePgn>602-626</MedlinePgn>
</Pagination>
<ELocationID EIdType="doi" ValidYN="Y">10.1105/tpc.18.00620</ELocationID>
<Abstract><AbstractText>Wood remains the world's most abundant and renewable resource for timber and pulp and is an alternative to fossil fuels. Understanding the molecular regulation of wood formation can advance the engineering of wood for more efficient material and energy productions. We integrated a black cottonwood (<i>Populus trichocarpa</i>
) wood-forming cell system with quantitative transcriptomics and chromatin binding assays to construct a transcriptional regulatory network (TRN) directed by a key transcription factor (TF), PtrSND1-B1 (secondary wall-associated NAC-domain protein). The network consists of four layers of TF-target gene interactions with quantitative regulatory effects, describing the specificity of how the regulation is transduced through these interactions to activate cell wall genes (effector genes) for wood formation. PtrSND1-B1 directs 57 TF-DNA interactions through 17 TFs transregulating 27 effector genes. Of the 57 interactions, 55 are novel. We tested 42 of these 57 interactions in 30 genotypes of transgenic <i>P. trichocarpa</i>
 and verified that ∼90% of the tested interactions function in vivo. The TRN reveals common transregulatory targets for distinct TFs, leading to the discovery of nine TF protein complexes (dimers and trimers) implicated in regulating the biosynthesis of specific types of lignin. Our work suggests that wood formation may involve regulatory homeostasis determined by combinations of TF-DNA and TF-TF (protein-protein) regulations.</AbstractText>
<CopyrightInformation>© 2019 American Society of Plant Biologists. All rights reserved.</CopyrightInformation>
</Abstract>
<AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Chen</LastName>
<ForeName>Hao</ForeName>
<Initials>H</Initials>
<Identifier Source="ORCID">0000-0002-6415-993X</Identifier>
<AffiliationInfo><Affiliation>State Key Laboratory of Tree Genetics and Breeding, Northeast Forestry University, Harbin, 150040, China.</Affiliation>
</AffiliationInfo>
<AffiliationInfo><Affiliation>Forest Biotechnology Group, Department of Forestry and Environmental Resources, North Carolina State University, Raleigh, North Carolina 27695.</Affiliation>
</AffiliationInfo>
<AffiliationInfo><Affiliation>Department of Genetics, North Carolina State University, Raleigh, North Carolina 27695.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Wang</LastName>
<ForeName>Jack P</ForeName>
<Initials>JP</Initials>
<Identifier Source="ORCID">0000-0002-5392-0076</Identifier>
<AffiliationInfo><Affiliation>State Key Laboratory of Tree Genetics and Breeding, Northeast Forestry University, Harbin, 150040, China.</Affiliation>
</AffiliationInfo>
<AffiliationInfo><Affiliation>Forest Biotechnology Group, Department of Forestry and Environmental Resources, North Carolina State University, Raleigh, North Carolina 27695.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Liu</LastName>
<ForeName>Huizi</ForeName>
<Initials>H</Initials>
<Identifier Source="ORCID">0000-0001-8853-2690</Identifier>
<AffiliationInfo><Affiliation>State Key Laboratory of Tree Genetics and Breeding, Northeast Forestry University, Harbin, 150040, China.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Li</LastName>
<ForeName>Huiyu</ForeName>
<Initials>H</Initials>
<Identifier Source="ORCID">0000-0002-7704-9721</Identifier>
<AffiliationInfo><Affiliation>State Key Laboratory of Tree Genetics and Breeding, Northeast Forestry University, Harbin, 150040, China.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Lin</LastName>
<ForeName>Ying-Chung Jimmy</ForeName>
<Initials>YJ</Initials>
<Identifier Source="ORCID">0000-0001-7120-4690</Identifier>
<AffiliationInfo><Affiliation>State Key Laboratory of Tree Genetics and Breeding, Northeast Forestry University, Harbin, 150040, China.</Affiliation>
</AffiliationInfo>
<AffiliationInfo><Affiliation>Department of Life Sciences, College of Life Science, National Taiwan University, Taipei, 10617, Taiwan.</Affiliation>
</AffiliationInfo>
<AffiliationInfo><Affiliation>Institute of Plant Biology, College of Life Science, National Taiwan University, Taipei 10617, Taiwan.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Shi</LastName>
<ForeName>Rui</ForeName>
<Initials>R</Initials>
<Identifier Source="ORCID">0000-0001-9070-1369</Identifier>
<AffiliationInfo><Affiliation>Forest Biotechnology Group, Department of Forestry and Environmental Resources, North Carolina State University, Raleigh, North Carolina 27695.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Yang</LastName>
<ForeName>Chenmin</ForeName>
<Initials>C</Initials>
<Identifier Source="ORCID">0000-0001-5442-9783</Identifier>
<AffiliationInfo><Affiliation>Forest Biotechnology Group, Department of Forestry and Environmental Resources, North Carolina State University, Raleigh, North Carolina 27695.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Gao</LastName>
<ForeName>Jinghui</ForeName>
<Initials>J</Initials>
<Identifier Source="ORCID">0000-0002-8190-855X</Identifier>
<AffiliationInfo><Affiliation>State Key Laboratory of Tree Genetics and Breeding, Northeast Forestry University, Harbin, 150040, China.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Zhou</LastName>
<ForeName>Chenguang</ForeName>
<Initials>C</Initials>
<Identifier Source="ORCID">0000-0001-6414-4693</Identifier>
<AffiliationInfo><Affiliation>State Key Laboratory of Tree Genetics and Breeding, Northeast Forestry University, Harbin, 150040, China.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Li</LastName>
<ForeName>Quanzi</ForeName>
<Initials>Q</Initials>
<Identifier Source="ORCID">0000-0002-7405-4402</Identifier>
<AffiliationInfo><Affiliation>State Key Laboratory of Tree Genetics and Breeding, Chinese Academy of Forestry, Beijing 100091, China.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Sederoff</LastName>
<ForeName>Ronald R</ForeName>
<Initials>RR</Initials>
<Identifier Source="ORCID">0000-0001-6819-7047</Identifier>
<AffiliationInfo><Affiliation>Forest Biotechnology Group, Department of Forestry and Environmental Resources, North Carolina State University, Raleigh, North Carolina 27695.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Li</LastName>
<ForeName>Wei</ForeName>
<Initials>W</Initials>
<Identifier Source="ORCID">0000-0002-4407-9334</Identifier>
<AffiliationInfo><Affiliation>State Key Laboratory of Tree Genetics and Breeding, Northeast Forestry University, Harbin, 150040, China.</Affiliation>
</AffiliationInfo>
<AffiliationInfo><Affiliation>Forest Biotechnology Group, Department of Forestry and Environmental Resources, North Carolina State University, Raleigh, North Carolina 27695.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Chiang</LastName>
<ForeName>Vincent L</ForeName>
<Initials>VL</Initials>
<Identifier Source="ORCID">0000-0002-7152-9601</Identifier>
<AffiliationInfo><Affiliation>State Key Laboratory of Tree Genetics and Breeding, Northeast Forestry University, Harbin, 150040, China vchiang@ncsu.edu.</Affiliation>
</AffiliationInfo>
<AffiliationInfo><Affiliation>Forest Biotechnology Group, Department of Forestry and Environmental Resources, North Carolina State University, Raleigh, North Carolina 27695.</Affiliation>
</AffiliationInfo>
<AffiliationInfo><Affiliation>Department of Forest Biomaterials, North Carolina State University, Raleigh, North Carolina 27695.</Affiliation>
</AffiliationInfo>
</Author>
</AuthorList>
<Language>eng</Language>
<PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType>
<PublicationType UI="D013485">Research Support, Non-U.S. Gov't</PublicationType>
<PublicationType UI="D013486">Research Support, U.S. Gov't, Non-P.H.S.</PublicationType>
</PublicationTypeList>
<ArticleDate DateType="Electronic"><Year>2019</Year>
<Month>02</Month>
<Day>12</Day>
</ArticleDate>
</Article>
<MedlineJournalInfo><Country>United States</Country>
<MedlineTA>Plant Cell</MedlineTA>
<NlmUniqueID>9208688</NlmUniqueID>
<ISSNLinking>1040-4651</ISSNLinking>
</MedlineJournalInfo>
<ChemicalList><Chemical><RegistryNumber>0</RegistryNumber>
<NameOfSubstance UI="D002843">Chromatin</NameOfSubstance>
</Chemical>
<Chemical><RegistryNumber>0</RegistryNumber>
<NameOfSubstance UI="D010940">Plant Proteins</NameOfSubstance>
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<Chemical><RegistryNumber>0</RegistryNumber>
<NameOfSubstance UI="D014157">Transcription Factors</NameOfSubstance>
</Chemical>
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<CitationSubset>IM</CitationSubset>
<MeshHeadingList><MeshHeading><DescriptorName UI="D002473" MajorTopicYN="N">Cell Wall</DescriptorName>
<QualifierName UI="Q000378" MajorTopicYN="N">metabolism</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D002843" MajorTopicYN="N">Chromatin</DescriptorName>
<QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName>
<QualifierName UI="Q000378" MajorTopicYN="Y">metabolism</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D018507" MajorTopicYN="N">Gene Expression Regulation, Developmental</DescriptorName>
<QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D018506" MajorTopicYN="N">Gene Expression Regulation, Plant</DescriptorName>
<QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D053263" MajorTopicYN="N">Gene Regulatory Networks</DescriptorName>
<QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D010940" MajorTopicYN="N">Plant Proteins</DescriptorName>
<QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName>
<QualifierName UI="Q000378" MajorTopicYN="N">metabolism</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D032107" MajorTopicYN="N">Populus</DescriptorName>
<QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName>
<QualifierName UI="Q000254" MajorTopicYN="N">growth & development</QualifierName>
<QualifierName UI="Q000502" MajorTopicYN="N">physiology</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D014157" MajorTopicYN="N">Transcription Factors</DescriptorName>
<QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName>
<QualifierName UI="Q000378" MajorTopicYN="Y">metabolism</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D014934" MajorTopicYN="N">Wood</DescriptorName>
<QualifierName UI="Q000254" MajorTopicYN="N">growth & development</QualifierName>
</MeshHeading>
</MeshHeadingList>
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<Month>01</Month>
<Day>15</Day>
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<Month>02</Month>
<Day>07</Day>
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   |texte=   Hierarchical Transcription Factor and Chromatin Binding Network for Wood Formation in Black Cottonwood (Populus trichocarpa).
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Hierarchical Transcription Factor and Chromatin Binding Network for Wood Formation in Black Cottonwood (Populus trichocarpa).

Hierarchical Transcription Factor and Chromatin Binding Network for Wood Formation in Black Cottonwood (Populus trichocarpa).

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